bio.pseq

Source code: bio/pseq.seq

class bio.pseq.pseq

Amino acid sequence

Magic methods:

__new__(p: cobj, n: int)

__new__(s: str)

__eq__(other: pseq)

__ne__(other: pseq)

__lt__(other: pseq)

__le__(other: pseq)

__gt__(other: pseq)

__ge__(other: pseq)

__str__()

__len__()

__bool__()

__hash__()

__getitem__(idx: int)

__getitem__(s: Slice)

__copy__()

__iter__()

__reversed__()

Methods:

split(k: int, step: int)

Iterator over length-k subsequences of the given sequence with the specified step size.

bio.pseq.translate(s: seq, table: Optional[Dict[seq, pseq]] = None)

Performs DNA to amino acid translation. An optional mapping from length-3 DNA sequences to amino acids can be given via table, otherwise the standard mapping is assumed.

extension seq

Methods:

translate()

extension str

Magic methods:

__prefix_p__[N](s: str)