bio.locus

Source code: bio/locus.seq

class bio.locus.Contig

Representation of a contig, consisting of an ID, name and length.

Properties:

tid

name

len

Magic methods:

__new__(tid: int, name: str, len: int)

__str__()

__len__()

__eq__(other: Contig)

__ne__(other: Contig)

__lt__(other: Contig)

__gt__(other: Contig)

__le__(other: Contig)

__ge__(other: Contig)

__hash__()

class bio.locus.Locus

Representation of a locus, consisting of a contig ID and 0-based position.

Properties:

tid

pos

reversed

Whether this locus is on the reverse strand

Magic methods:

__new__(tid: int, pos: int)

Constructs a Locus with specified contig ID and 0-based position. Negative positions indicate loci on the reverse strand.

__lt__(other: Locus)

__gt__(other: Locus)

__le__(other: Locus)

__ge__(other: Locus)

__invert__()

Returns the corresponding Locus on the reverse strand

__str__()