.. seq:module:: bio.locus

:seq:mod:`bio.locus`
--------------------

Source code: `bio/locus.seq <https://github.com/seq-lang/seq/blob/master/stdlib/bio/locus.seq>`_

.. seq:class:: Contig

   
       Representation of a contig, consisting of an ID, name and length.
   

   **Properties:**

      .. seq:attribute:: tid

      .. seq:attribute:: name

      .. seq:attribute:: len

   **Magic methods:**

      .. seq:method:: __new__(tid : int, name : str, len : int)
         :noindex:

      .. seq:method:: __str__()
         :noindex:

      .. seq:method:: __len__()
         :noindex:

      .. seq:method:: __eq__(other : Contig)
         :noindex:

      .. seq:method:: __ne__(other : Contig)
         :noindex:

      .. seq:method:: __lt__(other : Contig)
         :noindex:

      .. seq:method:: __gt__(other : Contig)
         :noindex:

      .. seq:method:: __le__(other : Contig)
         :noindex:

      .. seq:method:: __ge__(other : Contig)
         :noindex:

      .. seq:method:: __hash__()
         :noindex:



.. seq:class:: Locus

   
       Representation of a locus, consisting of a contig ID and 0-based position.
   

   **Properties:**

      .. seq:attribute:: tid

      .. seq:attribute:: pos

      .. seq:attribute:: reversed

            
                    Whether this locus is on the reverse strand
            


   **Magic methods:**

      .. seq:method:: __new__(tid : int, pos : int)
         :noindex:

            
                    Constructs a `Locus` with specified contig ID and 0-based position.
                    Negative positions indicate loci on the reverse strand.
            


      .. seq:method:: __lt__(other : Locus)
         :noindex:

      .. seq:method:: __gt__(other : Locus)
         :noindex:

      .. seq:method:: __le__(other : Locus)
         :noindex:

      .. seq:method:: __ge__(other : Locus)
         :noindex:

      .. seq:method:: __invert__()
         :noindex:

            
                    Returns the corresponding `Locus` on the reverse strand
            


      .. seq:method:: __str__()
         :noindex: