bio.iter

Source code: bio/iter.seq

type bio.iter.SeqReader

Parser for a plain txt-based sequence format, with one sequence per line.

Properties:

file

gzfile

Magic methods:

__init__(path: str, validate: bool, gzip: bool, copy: bool)

__seqs__()

__iter__()

__blocks__(size: int)

__enter__()

__exit__()

Methods:

close()

bio.iter.Seqs(path: str, validate: bool = True, gzip: bool = True, copy: bool = True)

extension str

Magic methods:

__seqs__()

__blocks__(size: int)