bio.intervals
¶
Source code: bio/intervals.seq
-
type
bio.intervals.
Interval
¶ Properties:
Magic methods:
-
__init__
(st: int, en: int, chrom_id: int)
-
__len__
()
-
__bool__
()
Methods:
-
with_max
(max: int)¶
-
-
class
bio.intervals.
IntervalTree
¶ Interval tree data structure. Adapted from [cgranges](# cgranges implementation adapted from
# https://github.com/lh3/cgranges).
Magic methods:
-
__init__
()
-
__len__
()
-
__bool__
()
-
__contains__
(chrom: str)
-
__iter__
() Iterator over all intervals in the tree
Methods:
-