`bio.c_htslib`¶

Source code: bio/c_htslib.seq

bio.c_htslib.LD¶

bio.c_htslib.hts_open()¶

bio.c_htslib.hts_close()¶

bio.c_htslib.hts_idx_destroy()¶

bio.c_htslib.hts_itr_destroy()¶

bio.c_htslib.hts_itr_destroy()¶

bio.c_htslib.hts_itr_next()¶

bio.c_htslib.sam_index_load()¶

bio.c_htslib.sam_hdr_read()¶

bio.c_htslib.sam_itr_querys()¶

bio.c_htslib.sam_read1()¶

bio.c_htslib.bam_read1()¶

bio.c_htslib.bam_init1()¶

bio.c_htslib.bam_cigar2qlen()¶

bio.c_htslib.bam_cigar2rlen()¶

bio.c_htslib.bam_aux_get()¶

bio.c_htslib.bam_aux2i()¶

bio.c_htslib.bam_aux2f()¶

bio.c_htslib.bam_aux2A()¶

bio.c_htslib.bam_aux2Z()¶

bio.c_htslib.bam_auxB_len()¶

bio.c_htslib.bam_auxB2i()¶

bio.c_htslib.bam_auxB2f()¶

bio.c_htslib.bam_endpos()¶

bio.c_htslib.sam_hdr_destroy()¶

bio.c_htslib.bam_destroy1()¶

bio.c_htslib.bcf_hdr_read()¶

bio.c_htslib.bcf_read()¶

bio.c_htslib.bcf_unpack()¶

bio.c_htslib.bcf_hdr_destroy()¶

bio.c_htslib.bcf_init()¶

bio.c_htslib.bcf_destroy()¶

bio.c_htslib.bcf_get_variant_types()¶

bio.c_htslib.bcf_get_variant_type()¶

bio.c_htslib.bcf_is_snp()¶

bio.c_htslib.bcf_has_filter()¶

bio.c_htslib.bcf_get_fmt()¶

bio.c_htslib.bcf_get_info()¶

bio.c_htslib.bcf_get_fmt_id()¶

bio.c_htslib.bcf_get_info_id()¶

bio.c_htslib.bcf_get_format_values()¶

bio.c_htslib.bcf_hdr_id2int()¶

bio.c_htslib.bcf_has_filter()¶

bio.c_htslib.bcf_hrec_format()¶

bio.c_htslib.bcf_clear()¶

bio.c_htslib.bcf_empty()¶

bio.c_htslib.bcf_dup()¶

bio.c_htslib.bcf_get_info_values()¶

bio.c_htslib.hts_version()¶

bio.c_htslib.seq_get_htsfile_fp()¶

bio.c_htslib.seq_is_htsfile_cram()¶

bio.c_htslib.seq_is_htsfile_bgzf()¶

bio.c_htslib.sam_itr_next(file: cobj, itr: cobj, r: cobj)¶