bio.c_htslib
¶
Source code: bio/c_htslib.seq
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bio.c_htslib.
LD
¶
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bio.c_htslib.
hts_open
()¶
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bio.c_htslib.
hts_close
()¶
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bio.c_htslib.
hts_idx_destroy
()¶
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bio.c_htslib.
hts_itr_destroy
()¶
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bio.c_htslib.
hts_itr_destroy
()¶
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bio.c_htslib.
hts_itr_next
()¶
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bio.c_htslib.
sam_index_load
()¶
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bio.c_htslib.
sam_hdr_read
()¶
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bio.c_htslib.
sam_itr_querys
()¶
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bio.c_htslib.
sam_read1
()¶
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bio.c_htslib.
bam_read1
()¶
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bio.c_htslib.
bam_init1
()¶
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bio.c_htslib.
bam_cigar2qlen
()¶
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bio.c_htslib.
bam_cigar2rlen
()¶
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bio.c_htslib.
bam_aux_get
()¶
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bio.c_htslib.
bam_aux2i
()¶
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bio.c_htslib.
bam_aux2f
()¶
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bio.c_htslib.
bam_aux2A
()¶
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bio.c_htslib.
bam_aux2Z
()¶
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bio.c_htslib.
bam_auxB_len
()¶
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bio.c_htslib.
bam_auxB2i
()¶
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bio.c_htslib.
bam_auxB2f
()¶
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bio.c_htslib.
bam_endpos
()¶
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bio.c_htslib.
sam_hdr_destroy
()¶
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bio.c_htslib.
bam_destroy1
()¶
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bio.c_htslib.
bcf_hdr_read
()¶
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bio.c_htslib.
bcf_read
()¶
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bio.c_htslib.
bcf_unpack
()¶
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bio.c_htslib.
bcf_hdr_destroy
()¶
-
bio.c_htslib.
bcf_init
()¶
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bio.c_htslib.
bcf_destroy
()¶
-
bio.c_htslib.
bcf_get_variant_types
()¶
-
bio.c_htslib.
bcf_get_variant_type
()¶
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bio.c_htslib.
bcf_is_snp
()¶
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bio.c_htslib.
bcf_has_filter
()¶
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bio.c_htslib.
bcf_get_fmt
()¶
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bio.c_htslib.
bcf_get_info
()¶
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bio.c_htslib.
bcf_get_fmt_id
()¶
-
bio.c_htslib.
bcf_get_info_id
()¶
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bio.c_htslib.
bcf_get_format_values
()¶
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bio.c_htslib.
bcf_hdr_id2int
()¶
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bio.c_htslib.
bcf_has_filter
()¶
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bio.c_htslib.
bcf_hrec_format
()¶
-
bio.c_htslib.
bcf_clear
()¶
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bio.c_htslib.
bcf_empty
()¶
-
bio.c_htslib.
bcf_dup
()¶
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bio.c_htslib.
bcf_get_info_values
()¶
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bio.c_htslib.
hts_version
()¶
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bio.c_htslib.
seq_get_htsfile_fp
()¶
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bio.c_htslib.
seq_is_htsfile_cram
()¶
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bio.c_htslib.
seq_is_htsfile_bgzf
()¶
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bio.c_htslib.
sam_itr_next
(file: cobj, itr: cobj, r: cobj)¶