bio.c_htslib¶
Source code: bio/c_htslib.seq
- bio.c_htslib.hts_open(: cobj, : cobj)¶
- bio.c_htslib.hts_set_threads(: cobj, : i32)¶
- bio.c_htslib.hts_close(: cobj)¶
- bio.c_htslib.hts_idx_destroy(: cobj)¶
- bio.c_htslib.hts_itr_destroy(: cobj)¶
- bio.c_htslib.hts_itr_destroy(: cobj)¶
- bio.c_htslib.hts_itr_next(: cobj, : cobj, : cobj, : cobj)¶
- bio.c_htslib.sam_index_load(: cobj, : cobj)¶
- bio.c_htslib.sam_hdr_read(: cobj)¶
- bio.c_htslib.sam_itr_querys(: cobj, : cobj, : cobj)¶
- bio.c_htslib.sam_read1(: cobj, : cobj, : cobj)¶
- bio.c_htslib.bam_read1(: cobj, : cobj)¶
- bio.c_htslib.bam_init1()¶
- bio.c_htslib.bam_cigar2qlen(a: int, b: Ptr[u32])¶
- bio.c_htslib.bam_cigar2rlen(a: int, b: Ptr[u32])¶
- bio.c_htslib.bam_aux_get(a: cobj, b: Ptr[byte])¶
- bio.c_htslib.bam_aux2i(a: Ptr[u8])¶
- bio.c_htslib.bam_aux2f(a: Ptr[u8])¶
- bio.c_htslib.bam_aux2A(a: Ptr[u8])¶
- bio.c_htslib.bam_aux2Z(a: Ptr[u8])¶
- bio.c_htslib.bam_auxB_len(a: Ptr[u8])¶
- bio.c_htslib.bam_auxB2i(a: Ptr[u8], b: u32)¶
- bio.c_htslib.bam_auxB2f(a: Ptr[u8], b: u32)¶
- bio.c_htslib.bam_endpos(a: cobj)¶
- bio.c_htslib.sam_hdr_destroy(: cobj)¶
- bio.c_htslib.bam_destroy1(: cobj)¶
- bio.c_htslib.bcf_hdr_read(: cobj)¶
- bio.c_htslib.bcf_read(: cobj, : cobj, : cobj)¶
- bio.c_htslib.bcf_unpack(: cobj, : i32)¶
- bio.c_htslib.bcf_hdr_destroy(: cobj)¶
- bio.c_htslib.bcf_init()¶
- bio.c_htslib.bcf_destroy(: cobj)¶
- bio.c_htslib.bcf_get_variant_types(: cobj)¶
- bio.c_htslib.bcf_get_variant_type(: cobj, : i32)¶
- bio.c_htslib.bcf_is_snp(: cobj)¶
- bio.c_htslib.bcf_has_filter(: cobj, : cobj, : cobj)¶
- bio.c_htslib.bcf_get_fmt(: cobj, : cobj, : cobj)¶
- bio.c_htslib.bcf_get_info(: cobj, : cobj, : cobj)¶
- bio.c_htslib.bcf_get_fmt_id(: cobj, : i32)¶
- bio.c_htslib.bcf_get_info_id(: cobj, : i32)¶
- bio.c_htslib.bcf_get_format_values(: cobj, : cobj, : cobj, : cobj, : cobj, : i32)¶
- bio.c_htslib.bcf_hdr_id2int(: cobj, : i32, : cobj)¶
- bio.c_htslib.bcf_has_filter(: cobj, : cobj, : cobj)¶
- bio.c_htslib.bcf_hrec_format(: cobj, : cobj)¶
- bio.c_htslib.bcf_clear(: cobj)¶
- bio.c_htslib.bcf_empty(: cobj)¶
- bio.c_htslib.bcf_dup(: cobj)¶
- bio.c_htslib.bcf_get_info_values(: cobj, : cobj, : Ptr[byte], : Ptr[cobj], : Ptr[i32], : i32)¶
- bio.c_htslib.hts_version()¶
- bio.c_htslib.seq_get_htsfile_fp(a: cobj)¶
- bio.c_htslib.seq_is_htsfile_cram(a: cobj)¶
- bio.c_htslib.seq_is_htsfile_bgzf(a: cobj)¶
- bio.c_htslib.sam_itr_next(file: cobj, itr: cobj, r: cobj)¶