`bio.c_htslib`¶

Source code: bio/c_htslib.seq

bio.c_htslib.LD¶

bio.c_htslib.hts_open(: cobj, : cobj)¶

bio.c_htslib.hts_close(: cobj)¶

bio.c_htslib.hts_idx_destroy(: cobj)¶

bio.c_htslib.hts_itr_destroy(: cobj)¶

bio.c_htslib.hts_itr_destroy(: cobj)¶

bio.c_htslib.hts_itr_next(: cobj, : cobj, : cobj, : cobj)¶

bio.c_htslib.sam_index_load(: cobj, : cobj)¶

bio.c_htslib.sam_hdr_read(: cobj)¶

bio.c_htslib.sam_itr_querys(: cobj, : cobj, : cobj)¶

bio.c_htslib.sam_read1(: cobj, : cobj, : cobj)¶

bio.c_htslib.bam_read1(: cobj, : cobj)¶

bio.c_htslib.bam_init1()¶

bio.c_htslib.bam_cigar2qlen(: int, : Ptr[u32])¶

bio.c_htslib.bam_cigar2rlen(: int, : Ptr[u32])¶

bio.c_htslib.bam_aux_get(: cobj, : Ptr[byte])¶

bio.c_htslib.bam_aux2i(: Ptr[u8])¶

bio.c_htslib.bam_aux2f(: Ptr[u8])¶

bio.c_htslib.bam_aux2A(: Ptr[u8])¶

bio.c_htslib.bam_aux2Z(: Ptr[u8])¶

bio.c_htslib.bam_auxB_len(: Ptr[u8])¶

bio.c_htslib.bam_auxB2i(: Ptr[u8], : u32)¶

bio.c_htslib.bam_auxB2f(: Ptr[u8], : u32)¶

bio.c_htslib.bam_endpos(: cobj)¶

bio.c_htslib.sam_hdr_destroy(: cobj)¶

bio.c_htslib.bam_destroy1(: cobj)¶

bio.c_htslib.bcf_hdr_read(: cobj)¶

bio.c_htslib.bcf_read(: cobj, : cobj, : cobj)¶

bio.c_htslib.bcf_unpack(: cobj, : i32)¶

bio.c_htslib.bcf_hdr_destroy(: cobj)¶

bio.c_htslib.bcf_init()¶

bio.c_htslib.bcf_destroy(: cobj)¶

bio.c_htslib.bcf_get_variant_types(: cobj)¶

bio.c_htslib.bcf_get_variant_type(: cobj, : i32)¶

bio.c_htslib.bcf_is_snp(: cobj)¶

bio.c_htslib.bcf_has_filter(: cobj, : cobj, : cobj)¶

bio.c_htslib.bcf_get_fmt(: cobj, : cobj, : cobj)¶

bio.c_htslib.bcf_get_info(: cobj, : cobj, : cobj)¶

bio.c_htslib.bcf_get_fmt_id(: cobj, : i32)¶

bio.c_htslib.bcf_get_info_id(: cobj, : i32)¶

bio.c_htslib.bcf_get_format_values(: cobj, : cobj, : cobj, : cobj, : cobj, : i32)¶

bio.c_htslib.bcf_hdr_id2int(: cobj, : i32, : cobj)¶

bio.c_htslib.bcf_has_filter(: cobj, : cobj, : cobj)¶

bio.c_htslib.bcf_hrec_format(: cobj, : cobj)¶

bio.c_htslib.bcf_clear(: cobj)¶

bio.c_htslib.bcf_empty(: cobj)¶

bio.c_htslib.bcf_dup(: cobj)¶

bio.c_htslib.bcf_get_info_values(: cobj, : cobj, : Ptr[byte], : Ptr[cobj], : Ptr[i32], : i32)¶

bio.c_htslib.hts_version()¶

bio.c_htslib.seq_get_htsfile_fp(: cobj)¶

bio.c_htslib.seq_is_htsfile_cram(: cobj)¶

bio.c_htslib.seq_is_htsfile_bgzf(: cobj)¶

bio.c_htslib.sam_itr_next(file: cobj, itr: cobj, r: cobj)¶