bio.bwt¶
Source code: bio/bwt.seq
- extension seq¶
Methods:
- suffix_array()¶
Suffix array of this sequence as a list of integers
- bwt()¶
Burrows-Wheeler transform of this sequence (contains $)
- lcp(sa: List[int])¶
Longest common prefix array based on suffix array [https://rahmannlab.gitlab.io/algorithmen-auf-sequenzen/pdfs/skript-aas.pdf](https://rahmannlab.gitlab.io/algorithmen-auf-sequenzen/pdfs/skript-aas.pdf), p. 61
- extension pseq¶
Methods: