bio.fasta

Source code: bio/fasta.seq

type bio.fasta.FASTARecord

Properties:

header
name
comment
seq
type bio.fasta.FASTAReader

Properties:

file
gzfile

Magic methods:

__init__(path: str, validate: bool, gzip: bool, copy: bool, fai: bool)
__seqs__()
__iter__()
__blocks__(size: int)
__enter__()
__exit__()
__getitem__(name: str)

Methods:

close()
write(seqs_iter, path)
bio.fasta.FASTA(path: str, validate: bool = True, gzip: bool = True, copy: bool = True, fai: bool = True)
type bio.fasta.pFASTARecord

Properties:

name
seq
type bio.fasta.pFASTAReader

Properties:

file
gzfile

Magic methods:

__init__(path: str, validate: bool, gzip: bool, copy: bool)
__seqs__()
__iter__()
__blocks__(size: int)
__enter__()
__exit__()

Methods:

close()
bio.fasta.pFASTA(path: str, validate: bool = True, gzip: bool = True, copy: bool = True)