.. seq:module:: bio.bed

:seq:mod:`bio.bed`
------------------

Source code: `bio/bed.seq <https://github.com/seq-lang/seq/blob/master/stdlib/bio/bed.seq>`_

.. seq:class:: BEDRecord

   **Properties:**

      .. seq:attribute:: chrom

      .. seq:attribute:: chrom_start

      .. seq:attribute:: chrom_end

      .. seq:attribute:: misc

      .. seq:attribute:: score

      .. seq:attribute:: strand

      .. seq:attribute:: thick_start

      .. seq:attribute:: thick_end

      .. seq:attribute:: item_rgb

      .. seq:attribute:: block_count

      .. seq:attribute:: block_sizes

      .. seq:attribute:: block_starts

      .. seq:attribute:: num_cols

      .. seq:attribute:: __len__

   **Magic methods:**

      .. seq:method:: __len__()
         :noindex:



.. seq:class:: BEDReader

   **Properties:**

      .. seq:attribute:: file

      .. seq:attribute:: header

   **Magic methods:**

      .. seq:method:: __new__(path : str, validate : bool, copy : bool)
         :noindex:

      .. seq:method:: __iter__()
         :noindex:

      .. seq:method:: __enter__()
         :noindex:

      .. seq:method:: __exit__()
         :noindex:

   **Methods:**

      .. seq:method:: init_header(path : str)

      .. seq:method:: is_line_header(line : str)

      .. seq:method:: close()



.. seq:function:: BED(path : str, validate : bool = True, copy : bool = True)